by Panagiotis Moulos | Jul 19, 2013 | Blog
The t-test between two samples/biological conditions is still one of the most common statistical tests used for the detection of differentially expressed genes in microarray studies, even if a lot of specialized tests have been developed during the past 10 years....
by Panagiotis Moulos | Mar 25, 2013 | Blog
Recently, I was asked by a collegue if I recognize the following raw data format coming from a quite old dataset which came out from the first next generation sequencers and relatively old software which was used for base calling:...
by Panagiotis Moulos | Mar 2, 2013 | Blog
Recently, I was asked by one of my collegues if there was a way to display stranded wiggle signal files. A couple of years ago I would say that it is possible, however quite messy, as the only way to display stranded wiggle signal files was to split the original...
by Panagiotis Moulos | Feb 27, 2013 | Blog
As promised in the previous post, in this one, I will show how can one “hack” into the UCSC Genome Browser (local) MySQL database in order to create permanent tracks (annotation, signal or other). One way is of course the track hubs, but they are not...
by Panagiotis Moulos | Feb 22, 2013 | Blog
One of the projects that I am currently involved deals with the detection of novel long non-coding RNAs regulating the WNT signaling pathway in colon cancer. Since we have had our own local installation of the UCSC genome browser for some time now (and it makes a huge...
